Protein Information

Protein ZmEREB50
ZmEREB50 is a protein in the AP2/ERF-ERF family.
Information
TF Name:	ZmEREB50
Species:	Maize
TF Family:	AP2/ERF-ERF
Gene Name(Synonym):	EREB50
Uniprot ID:	A0A1D6PDQ1
Subgenome:	1

ZmEREB50 is a protein in the AP2/ERF-ERF family. NOTE the "Uniprot ID" shown on the right is a placeholder for testing. The interactive structure shown is based on that id.

Overview of domains present in v5 transcripts
	PF00847
Zm00001eb119540_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Gene ID	Type	Sequence	FIMO	Position
Zm00001d039324	DAPseq	sequence	fimo	position
Zm00001d039324	DAPseq	sequence	fimo	position
Zm00001d039324	ChIPseq	sequence	fimo	position
Zm00001d039324	PChIPseq	sequence	fimo	position

Interactions where ZmEREB50 is the regulator

There are no protein-dna interactions that fit this criteria.

Interactions where ZmEREB50 is the target
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There are 196 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb119540_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

MWPMEEEMFLAVKRTEHVEVTSRAMDSAPAAGPRTVRVFCDDNDATDSSGDEAEGAAARRRVKRYVQEIRLQRAVPVKEE
AASARAVAGERPRPLALPGRKRKSDGAGAGAEPRFRGVRRRPWGKYAAEIRDPWRRVRVWLGTFDTAEEAAKVYDSAAIQ
LRGADATTNFEHAAVPVPVPDEVAGRLPQPPPAPASKNASSSATSSYDSGEESHAAAASPTSVLRTFPPSSAAADATCKK
PAPAAETDESTGVGGSRSSVYAYPFFANDDCFGGDFPPLYTDFDLLADFPEPTLDFLADIPEEKLPPLPEPFPAASPDEC
PSDAEAASPARWQQVDDFFQDITDLFQIDPLPVV

Secondary Structure Color Code
BEND	region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P	left-handed polyproline helix
HELX_RH_3T_P	right-handed 3-10 helix
HELX_RH_AL_P	right-handed alpha helix
HELX_RH_PI_P	right-handed pi helix
STRN	beta strand
TURN_TY1_P	type I turn
UNDETERMINED	no data available

Domains Present
PF00847
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Nucleotide Sequence
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ACAGCAGCAGCAACAACAACAAACA...

GRMZM2G142179_T01 from maize genome v3

Related TFome: pUT4567

Amino Acid Sequence
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Nucleotide Sequence
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CCACCCCCACCACACCCAAGCCCGG...

Zm00001d039324_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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ATGTGGCCCATGGAGGAGGAGATGT...

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Protein ZmEREB50

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs

Interactions where ZmEREB50 is the regulator

Interactions where ZmEREB50 is the target
Expand

Zm00001eb119540_T001 from maize genome v5

Amino Acid Sequence
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Color Coding: None Secondary Structure Domain

Nucleotide Sequence
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Expand

GRMZM2G142179_T01 from maize genome v3

Amino Acid Sequence
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Nucleotide Sequence
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Expand

Zm00001d039324_T001 from maize genome v4

Amino Acid Sequence
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Nucleotide Sequence
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